PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3517_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 303aa    MW: 33643.9 Da    PI: 7.641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3517_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.15e-16197242555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hne ErrRRdriN+++ +L++llP+a      K +K++iL  ++e++k+Lq
  RrC3517_p4 197 HNESERRRRDRINQRMRTLQKLLPTA-----SKADKVSILDDVIEHLKQLQ 242
                 *************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.06192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17195251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-17195249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.34E-10197246No hitNo description
PfamPF000102.8E-13197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-17198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTKMSSFIGF LGAERGFWSL RGQGTSNPLP HMSNYGVKEL TWENGQLTVH GLGQGVEPTT  60
SANLLWTQAL NGCETLESVV HQAALQQQSK NGRDHNNSES KDGSCSRKRG YPQEMDCWFS  120
PQEESHRVGH SVTASASGTN MSWASFESGR SLKTARTGDR DYLFSGSETQ ETEGDEQETR  180
GEGGRSNGRR GRAAAIHNES ERRRRDRINQ RMRTLQKLLP TASKADKVSI LDDVIEHLKQ  240
LQAQVQDCTN ASSSDPYSAF LAQTMNMDLY NKMAAAIYRQ QSDQTTKVNT GMPSSSTNHE  300
KRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527341e-173AK352734.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594159.11e-144PREDICTED: transcription factor PIF7
SwissprotQ570R71e-132PIF7_ARATH; Transcription factor PIF7
TrEMBLA0A078GEN91e-140A0A078GEN9_BRANA; BnaC07g31140D protein
TrEMBLA0A0D3DDJ61e-144A0A0D3DDJ6_BRAOL; Uncharacterized protein
STRINGBra012972.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141231822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.11e-103phytochrome-interacting factor7